Index

A

atlas_to_cp_mask() (in module step3_help)

B

backup_unpickle() (in module step3_help)

C

ClassHack (class in step3_help) clip() (in module step1_help)

compute_all_dice_scores() (in module step3_help) compute_all_hausdorff_scores() (in module step3_help) compute_dice_score() (in module step3_help)

D

delaxes() (step3_help.ClassHack method)

draw_stack() (in module step1_help)

F

find_class() (step3_help.Unpickler method)

G

gA_from_gid() (in module step1_help)

get_target_ids() (in module step3_help) get_xyzoff() (in module step3_help)

L

load_swc() (in module step3_help)

M

main() (in module step1_atlas_registration) (in module step2_atlas_registration) (in module step3_atlas_registration) module step1_atlas_registration step1_help step2_atlas_registration step3_atlas_registration step3_help

N

npz_to_Nifti1() (in module step3_help)

P

pick() (step3_help.ClassHack method)

plot_all_slices() (in module step3_help)

S

small_to_big() (in module step1_help) step1_atlas_registration module step1_help module step2_atlas_registration module

step3_atlas_registration module step3_help module str_to_2D_mat() (in module step1_help) str_to_list() (in module step3_help)

T

ternary_to_boundary() (in module step3_help)

trapezoid() (in module step1_help)

U

Unpickler (class in step3_help)