(Step 3) Neuron Registration

Registration of .swc neuronal representations to high resolution mouse brain images

• Neuron registration
  • main()
• Step 3 helper functions
  • ClassHack
  • Unpickler
  • atlas_to_cp_mask()
  • backup_unpickle()
  • compute_all_dice_scores()
  • compute_all_hausdorff_scores()
  • compute_dice_score()
  • get_target_ids()
  • get_xyzoff()
  • load_swc()
  • npz_to_Nifti1()
  • plot_all_slices()
  • str_to_list()
  • ternary_to_boundary()