Index

_

__dir__() (in module emlddmm.emlddmm) __format__() (in module emlddmm.emlddmm) __init_subclass__() (in module emlddmm.emlddmm) __new__() (in module emlddmm.emlddmm)

__reduce__() (in module emlddmm.emlddmm) __reduce_ex__() (in module emlddmm.emlddmm) __sizeof__() (in module emlddmm.emlddmm) __subclasshook__() (in module emlddmm.emlddmm)

A

add_edge() (transformation_graph_v01.Graph method) add_space() (transformation_graph_v01.Graph method) adj (transformation_graph_v01.Graph attribute) affine_from_figure() (in module emlddmm)

apply() (emlddmm.Transform method) apply_transform_float() (in module emlddmm) apply_transform_from_file_to_points() (in module emlddmm) apply_transform_int() (in module emlddmm) atlas_free_reconstruction() (in module emlddmm)

B

BFS() (transformation_graph_v01.Graph method)

C

compose_sequence() (in module emlddmm) compute_atlas_from_slices() (in module emlddmm)

convert_points_from_json() (in module emlddmm) curve_annotator module

D

data (emlddmm.Image attribute) downmedian() (in module emlddmm) downmode() (in module emlddmm) downsample() (emlddmm.Image method), [1] (in module emlddmm)

downsample_ax() (in module emlddmm) downsample_image_domain() (in module emlddmm) downsample_slices() (in module histsetup) draw() (in module emlddmm)

E

ellipsoid() (in module test_emlddmm) emlddmm module emlddmm() (in module emlddmm)

emlddmm.emlddmm module emlddmm_multiscale() (in module emlddmm) extent_from_x() (in module emlddmm)

F

find_bounding_box() (in module emlddmm)

fnames() (emlddmm.Image method), [1] (in module emlddmm)

G

generate_sidecars() (in module histsetup) Graph (class in transformation_graph_v01)

graph_reconstruct() (in module transformation_graph_v01) graph_reconstruct_() (in module transformation_graph_v01)

H

histsetup module

I

Image (class in emlddmm)

initialize_A2d_with_bbox() (in module emlddmm) interp() (in module emlddmm)

L

labels_to_rgb() (in module emlddmm)

load_slices() (in module emlddmm)

M

main() (in module histsetup) (in module transformation_graph_v01) make_samples_tsv() (in module histsetup) map_image() (in module emlddmm) (transformation_graph_v01.Graph method) map_image_() (transformation_graph_v01.Graph method) map_points() (in module emlddmm) (transformation_graph_v01.Graph method) map_points_() (transformation_graph_v01.Graph method)

mask (emlddmm.Image attribute) merge() (transformation_graph_v01.Graph method) module curve_annotator emlddmm emlddmm.emlddmm histsetup test_emlddmm transformation_graph_v01

N

name (emlddmm.Image attribute)

names (emlddmm.Image attribute) normalize() (emlddmm.Image method)

O

orientation_to_orientation() (in module emlddmm)

orientation_to_RAS() (in module emlddmm)

P

pad() (in module emlddmm)

path (emlddmm.Image attribute) project_affine_to_rigid() (in module emlddmm)

R

read_data() (in module emlddmm) read_matrix_data() (in module emlddmm) read_vtk_data() (in module emlddmm) read_vtk_polydata() (in module emlddmm)

registered_domain() (in module emlddmm) reshape_for_local() (in module emlddmm) reshape_from_local() (in module emlddmm) rigid2D() (in module emlddmm) run_registrations() (in module transformation_graph_v01)

S

shortest_path() (transformation_graph_v01.Graph method) sinc_resample_numpy() (in module emlddmm)

space (emlddmm.Image attribute) spaces (transformation_graph_v01.Graph attribute)

T

test_emlddmm module test_read_write_data() (in module test_emlddmm) test_read_write_vtk_data() (in module test_emlddmm)

title (emlddmm.Image attribute) Transform (class in emlddmm) transformation_graph_v01 module transforms() (transformation_graph_v01.Graph method)

V

v_to_phii() (in module emlddmm)

W

weighted_intraclass_variance() (in module emlddmm) write_data() (in module emlddmm) write_matrix_data() (in module emlddmm) write_outputs_for_pair() (in module emlddmm)

write_qc_outputs() (in module emlddmm) write_transform_outputs() (in module emlddmm) write_transform_outputs_() (in module emlddmm) write_vtk_data() (in module emlddmm) write_vtk_polydata() (in module emlddmm)

X

x (emlddmm.Image attribute)